PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G247100.7
Common NameB456_010G247100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 253aa    MW: 27123.5 Da    PI: 7.2956
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G247100.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.11.3e-101203655
             G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                        m+v+gLt++hvkSHLQkYRl
  Gorai.010G247100.7  1 MGVQGLTIYHVKSHLQKYRL 20
                        99*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-9121IPR009057Homeodomain-like
PfamPF143791.9E-235297IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGVQGLTIYH VKSHLQKYRL AKYLPDSSSD GKKPDKKETG DMLSNLDGSS GMQITEALKL  60
QMEVQKRLHE QLEVQRQLQL RIEAQGKYLK KIIEEQRLGG VLAEAPGTGA SVPALGDNGL  120
ESDKKTDPAT PAPTSESPLQ DKAAKEGTSA KSHSVDESFS SHHEPLTPDS GCHVGSPAGS  180
PKGEMLKKKQ RVSMAGAFAK PEMVLPHQIL DSSINASYQQ SQSVFMGEQF NPSSGISIRN  240
ENQSGKGSGT EL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450884.10.0PREDICTED: myb family transcription factor APL
RefseqXP_012450885.10.0PREDICTED: myb family transcription factor APL
TrEMBLA0A0D2UIL50.0A0A0D2UIL5_G
STRINGVIT_00s0475g00040.t011e-131(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.23e-77G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]